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1_hmprepattern

Histone prepattern project (2011, 2012)

anno

Anno is a variant annotation tool

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bayesteller

A probabilistic model based tool for molecular diagnosis of cancer based on concurrent SNVs

combivote

A general purpose machine learning tool focusing on interacting features, where bootstrap, k-means clustering, multiple variable contingency table are used. Ideas are also borrow form RandomForest and NaiveBayes.

datagotham2013

ebcall

an empirical Bayesian framework for mutation detection from cancer genome sequencing data

go

The Open Source Data Science Masters

machinelearning-c---code

using c++ code to show the example of machine learning

mlr

mlr: Machine Learning in R

ngs_server

Ultra Lightweight NGS (BAM/VCF) Server

node-crowdprocess

Write programs for crowdprocess programmatically in an easy way.

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pyvcf

A Variant Call Format reader for Python.

qmachine

A platform for World Wide Computing

rth

Norm Matloff's Rth package

ruit.github.com

scienceplots

barplots with error bars, t-test visualization, etc., web application, since March, 2014

theta

Tumor Heterogeneity Analysis (THetA) is an algorithm that estimates the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data.

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities