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attentivefp

bamdst

a lightweight bam file depth statistical tool

chainer-chemistry

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

chembl_beaker

RDKit and OSRA in the Bottle on Tornado

comments

Record comments for ruska612

course_rna-seq2015

course_rna-seq2017

cs231n.github.io

Public facing notes page

ctrp-reference

Reference MATLAB implementation of foundational analyses for Cancer Therapeutics Response Portal (CTRP; http://portals.broadinstitute.org/ctrp)

cyrest

DEPRECATED. Please visit our new repository (cytoscape/cyREST)

datarail

Datarail's experimental design repository is a system for aiding the design, analyses, and visualization of high throughput dose response experiments.

deep-learning-keras-tensorflow

Introduction to Deep Neural Networks with Keras and Tensorflow

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepdream

deeplearning-biology

A list of deep learning implementations in biology

deepsea

Similarity Ensemble Approach with deep learning substance fingerprints

deepsynergy

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

django-rdkit

dlwpt-code

Code for the book Deep Learning with PyTorch by Eli Stevens and Luca Antiga.

dockop

faster docking

drkg

A knowledge graph and a set of tools for drug repurposing

fastqc

csf fork of fastqc for usage on selected reads of unaligned bam file

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

hcc_nen

liver cancer project

intro-to-chipseq

Intro to ChIPseq using HPC

keggscape

A Cytoscape app for importing KGML(KEGG pathway XML)

knowledgebase

Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.

maria-web

web interface for deep learning peptide presentation