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pschwllr avatar pschwllr commented on June 6, 2024

Hard to say like that, could you provide us with more information?

What is the example reaction that you are using as input?
What are your versions of pytorch, hugginface transformers and rdkit?

import torch
torch.__version__
> '1.6.0'
import transformers
transformers.__version__
> '3.3.1'

After installing rxnmapper with:

conda create -n rxnmapper_test python=3.7
conda activate rxnmapper_test
conda install -c rdkit rdkit=2020.03.3
pip install rxnmapper

I can run the following example code without error:

from rxnmapper import RXNMapper
rxn_mapper = RXNMapper()
rxns = ['CCOCC.C[Mg+].O=Cc1ccc(F)cc1Cl.[Br-]>>CC(O)c1ccc(F)cc1Cl',
       'BrCCOCCBr.CCN(C(C)C)C(C)C.CCOC(C)=O.CN(C)C=O.Cl.NCC(F)(F)CO>>OCC(F)(F)CN1CCOCC1'
       ]
outputs = rxn_mapper.get_attention_guided_atom_maps(rxns)
print(outputs[0]['mapped_rxn'])

from rxnmapper.

vmarar avatar vmarar commented on June 6, 2024

Thanks!

from rxnmapper.

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