ryansohny Goto Github PK

ak1_pacbio

architecture-training

Architecture Patterns with Python (TDD, DDD, EDM)

atac-seq_pipeline

ATAC-seq processing pipeline

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bi-be-cs-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

cancer_notes

A continually expanding collection of cancer genomics notes and data

cellphonedb

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own single-cell transcriptomics data.

citra-apple-silicon-build

A Nintendo 3DS Emulator

cs-video-courses

List of Computer Science courses with video lectures.

ds_practice

engcomp1_offtheground

Learn to interact with Python and handle data with Python. Join the online course!

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hgsoc

hic-data-analysis-bootcamp

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

hic_tools

A collection of tools for Hi-C data analysis

ict

Introduction to computational thinking (Julia)

introductiontoprobabilitypy

Jupyter notebooks with the Python equivalent to the R code sections in Blitzstein and Hwang's Introduction To Probability, Second Edition

islp

"Learning" Statistical "Learning"

linear-algebra-with-python

Lecture Notes for Linear Algebra Featuring Python

math4life

math4life

mathutilities

A collection of some of the neat math and physics tricks that I've collected over the last few years.

misc

mml-companion

This is a companion to the ‘Mathematical Foundations’ section of the book, Mathematics for Machine Learning by Marc Deisenroth, Aldo Faisal and Cheng Ong, written in python for Jupyter Notebook.

pns

Collection of Various Concepts in Probability and Statistics

popgen-notes

Population genetics notes

project-luad

Molecular Characterization of Lung Adenocarcinoma

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

rwrap

Seamlessly integrate R packages into Python.

ryansohny.github.io