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3dnamethylation

custom scripts used to process and filter data for the 3DNA methylation project

4dn_jawg_h1

5mc-h3k27me3

Custom scripts and Jupyter notebooks used to generate figures for the 5mC/H3K27me3 antagonism project

astrobiomike.github.io

Site to help biologists wade their way into bioinformatics.

awesome-bioinformatics-jobs

Resources for bioinformatics jobs

bagoftricks

A collection of python and bash scripts for various bioinformatics-related tasks

bi-be-cs-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

bioinf_tools

Bioinformatics Tools

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

book

coding_exercise_tcga_infiltration

coding exercise using TCGA immune infiltration data

computational_biology

course material

covarplot

CoVarPlot - Covarage Variant Plots for viral whole genome sequencing

datascience_interactive_python

Python interactive dashboards for learning data science

dockerdata

dockerdev

dockerstuff

test

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

gpu-bioinformatics

Listing of GPU based bioinformatics software & sites & publications

intro-to-r

nanocaller

Variant calling tool for long-read sequencing data

nanomethphase

Methylation Phasing for Nanopore Sequencing

online_r_learning

Online R learning for applied statistics

pc-clocks

Code for the calculation and implementation of the PC Based epigenetic clocks

princess

ONT-PACBIO:SVs

pyr

python_tutorials

Python tutorials in both Jupyter Notebook and youtube format.

pythontubs

Python introduction for life scientists

r-pharma-2023-tidymodels

Introduction to machine learning with {tidymodels}

sturgeon

Sturgeon is a CNS neural network classifier