sajjadasaf Goto Github PK

addinit

Initialize an 'RStudio' Project

agat

Another Gff Analysis Toolkit

aligngraph

Algorithm for secondary de novo genome assembly guided by closely related references

annosine

SINE annotation tool for plant genomes

assembly-annotation-pipeline

Plant genome assembly and annotation pipeline using snakemake

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

azteca-tococa

bioinformatics-coffee-hour

Short lessons from FAS Informatics coffee hour

bubble_plot

Visualize linear and non-linear connections between numerical/categorical features (2D histogram with bubbles)

cgview_comparison_tool

The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.

chloroextractor

clinker

Gene cluster comparison figure generator

comparetranscriptome

repository of scripts for comparative transcriptome analysis

csr3-genome

dbg2olc

The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.

donut

Donut: automated Circos visualization of multiple fasta files within a docker image

dupgen_finder

A pipeline used to identify different modes of duplicated gene pairs

easymicrobiomer

Using R language in microbiome analysis

edta

Extensive de-novo TE Annotator

estimate_genome_size.pl

Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

fast-plast

Automated de novo assembly of whole chloroplast genomes.

fastks

Pipeline for generate Ks plots of transcriptome data.

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

genovi

GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

getorganelle

https://github.com/Kinggerm/GetOrganelle/wiki

ggpubr

'ggplot2' Based Publication Ready Plots

hapo-g

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

haslr

A fast tool for hybrid genome assembly of long and short reads

hgtector

HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.