Comments (6)
from dsol_rv0.2.
Hi,
I have added the two missing samples and double checked that there is no problem of alignment of the biological data.
@svgsponer What all methods do you plan to run as we are writing a continuation paper comparing latest deep learning methods on the same dataset?
from dsol_rv0.2.
Great, thanks a lot for the fast reaction!
With the alignment of the biological data, I mean that when a missing sequence is somewhere in the middle of the test_src file all following sequences will be off by one from the corresponding line in test_src_bio. Consequently, when I combine the two files the wrong SCRATCH features are assigned to a sequence.
Just to make sure the last column in test_src_bio corresponds to the target variable?
from dsol_rv0.2.
right. I will try to find it. Its been a year. Maybe its just the first 1999 sequences from src_bio.
Why don't you try to run it. The code won't throw an error, because it is just taking the first 1999 sequences.
@raghvendra5688 pinging Raghavendra if he remembers.
from dsol_rv0.2.
Hi,
Great thanks a lot!
@raghvendra5688 I currently work on various methods that learn linear models in the unlimited length k-mer feature space based on work done for https://github.com/svgsponer/SqLoss.
A continuation paper sounds interesting and I'm curious to see new improvements. What architectures are you planning to try out?
from dsol_rv0.2.
We are planning to use GANs and VAE for the same problem. I will update you about results when we have a draft ready.
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Related Issues (10)
- Model is throwing an error for one sequence
- Error: cannot access '.../SCRATCH-1D_1.1/tmp/20190602-010133-829841579409/dataset.pro': No such file or directory HOT 5
- TypeError: The two branches should have identical types, but they are TensorType(float64, 3D) and TensorType(int32, 3D) respectively.
- Prediction output is low and generating feature takes lots of time
- How to explain the results HOT 1
- ResolvePackageNotFound: HOT 1
- R package Interpol was removed from CRAN HOT 1
- R script is taking much time to generate Embeddings for given FASTA file
- cannot access '../SCRATCH-1D_1.1/tmp/.../dataset.pro' HOT 1
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