Comments (1)
SAMtoBAM
commented on May 29, 2024
Hi there
Could you share an SVG of the whole genome alignment?
What is within these regions
Just a simple guess, most likely these regions across the different chromosomes contain shared repeats and therefore MUM&Co is finding alignments that bridge these chromosomes and interpreting it as a translocation. Have you tried increasing the -minlen?
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Related Issues (20)
- multiple threads? HOT 7
- awk: cmd. line:1: fatal: division by zero attempted HOT 4
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