Name: Samuele Soraggi
Type: User
Company: Aarhus University
Bio: Data Scientist at Aarhus University. Statistician, bioinformatician and developer.
Languages: Python|R|Bash|SQL
Tools: Docker|dash|pymc|scanpy
Location: Aarhus, Denmark
Blog: samuelesoraggi.github.io
Samuele Soraggi's Projects
Program for analysing NGS data.
Notes, slides and exercises from bayesian statistics readings
A course template for courses
Incrementally difficult dash apps to learn some interactive plots
Docker for scRNA-seq analysis in python
R package for detecting doublets in single-cell RNA sequencing data
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
Two small example to make a dash interactive interface work with either gunicorn or jupyterlab
example course repository to test
example course repository to test
course template
Quadratic Approximation for PyMC
A Python Based Library to Calculate Statistical Estimators
professional webpage
single cell single molecule course exercise material and webpage
Development of the transcriptomics app based on Rstudio for UCloud
Scripts I have found really useful when working. Various programming languages.