Comments (2)
Proposed set of tasks:
- In psd-provision, create a new volume and attach the volume into dsm-swarm instance
- In psd-deployment, modify the docker_stack.yml and mount the new volume into the lighthouse reports folder
Then for each environment (uat, training, production):
- In psd-provision select the workspace (training)
- terraform apply (to create the volume; we dont have to restart the server, is automatically added as a new device (/dev folder)), to know the name check in dmesg output
- Log into the machine and create the filesystem in the new added device
sudo mkfs.ext4 /dev/disk/by-id/virtio-cbec7cb1-***-***-***
- Create a new folder to mount the filesystem
sudo mkdir /var/lib/lighthouse-reports
- Edit /etc/fstab and add the mount of the new filesystem in the new created folder
(It should do something like this):
sudo mount /dev/disk/by-id/virtio-cbec7cb1-***-***-*** /var/lib/lighthouse-reports
line like:
/dev/vdxxx /var/lib/lighthouse-reports ext4 defaults 0 0
- Copy existing files from /var/lib/docker/volumes/uat_stack_lighthouse_reports_data/_data into /var/lib/lighthouse-reports
from lighthouse.
Volume has been deployed and working on UAT
from lighthouse.
Related Issues (20)
- DPL-470 - LSPA date tested in future HOT 1
- DPL-472 - Brants Bridge sent root sample ids in incorrect format
- DPL-473 - Brants Bridge sent ~1500 samples with incorrect RNA ID HOT 1
- DPL-342 Remove report [C=S, V=3]
- DPL-362 As GSU (Alan K) I want to allocate a unique COG-UK ID to all historic Heron samples so that we can use this instead of Root Sample ID within our internal tracking. HOT 10
- DPL-426 Remove updates for MLWH once all samples arrive via RabbitMQ HOT 2
- DPL-429 As developer I want to remove the lighthouse reports generation as is not in use anymore and want to have less code to maintain HOT 1
- DPL-544 Make data consistent between MongoDB, MLWH and Sequencescape
- DPL-614 Missing plate map (Heron)
- DPL-631 [BUG] Incorrect evaluation of must_sequence affects both Box buster and Biosero HOT 1
- DPL-629 Check status of Heron CP plates HOT 1
- DPL-675-2: AROUND SEPTEMBER 2023 -- Remove reports and Sentinel functionality HOT 1
- DPL-717-1: Create a new endpoint for creating entities for Lighthouse deep-well plates in Sequencescape
- DPL-757 As PSD I want to create a first draft design for RVI new project (multipick) that will reflect lims architecture and required components to solve the current list of user requirements obtained.(S=M; C=L) HOT 1
- DPL-776 Investigate a way to identify Heron/RVI samples already in SequenceScape so that we can avoid problems during stamping from deep wells to shallow well plates for RVI.
- DPL-782 Filter samples being imported for deep-well to shallow-well stamping so as to exclude samples already in Sequencescape
- DPL-821 [RVI] Cherry-picking LSW-96 Stock plates using the existing Tecan systems HOT 4
- DPL-670-4 Pass a Lighthouse specific API key to Sequencescape calls HOT 3
- DPL-840 Populate missing sample fields in MLWH and consequently in CoTrack
- Y24-191 - Use the v2 API key for all Sequencescape requests
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from lighthouse.