Facing memory exhausted while running inference about abstractive-summarization-with-transfer-learning

[santhoshkolloju]

Can you change this in infer single example
src_input_ids:np.array(features.src_input_ids).reshape(1,-1),
src_segment_ids : np.array(features.src_segment_ids).reshape(1,-1)

[santhoshkolloju]

Have u checked u might be using bigger batch size which doesn't fit in your memory

[Tanmay06]

No I haven't changed any batch sizes, by default it should be 1 for inference too, right ? And I'm using Azure Nvidia Tesla M60 GPU with 8Gib of memory.

[santhoshkolloju]

I think model is around 250 million parameters I doubt 8gb can handle this along with the data. Please try with 16gb ram.

[Tanmay06]

But I was able to train the model on same gpu without any issues. I'm facing this problem only when i try to do inference on the trained model / last checkpoint.

[santhoshkolloju]

Please post the link to inference code you are running. 512,10,50,512 this tensor size seems to be wrong. Might be the problem with way you are passing the data.
Check the size of input tensor it should be 1×512

[Tanmay06]

This is the inference code that I'm running.

`from flask import Flask,request,render_template
import requests
import json
from collections import OrderedDict
import os
import numpy as np
import tensorflow as tf

app =Flask(name)

import sys

if not 'texar_repo' in sys.path:
sys.path += ['texar_repo']

from config import *
from model import *
from preprocess import *

start_tokens = tf.fill([tx.utils.get_batch_size(src_input_ids)],
bos_token_id)
predictions = decoder(
memory=encoder_output,
memory_sequence_length=src_input_length,
decoding_strategy='infer_greedy',
beam_width=beam_width,
alpha=alpha,
start_tokens=start_tokens,
end_token=eos_token_id,
max_decoding_length=300,
mode=tf.estimator.ModeKeys.PREDICT
)
if beam_width <= 1:
inferred_ids = predictions[0].sample_id
else:
# Uses the best sample by beam search
inferred_ids = predictions['sample_id'][:, :, 0]

tokenizer = tokenization.FullTokenizer(
vocab_file=os.path.join(bert_pretrain_dir, 'vocab.txt'),
do_lower_case=True)

sess = tf.Session()
def infer_single_example(story,actual_summary,tokenizer):
example = {"src_txt":story,
"tgt_txt":actual_summary
}
features = convert_single_example(1,example,max_seq_length_src,max_seq_length_tgt,tokenizer)
feed_dict = {
src_input_ids:np.array(features.src_input_ids).reshape(-1,1),
src_segment_ids : np.array(features.src_segment_ids).reshape(-1,1)

  }

  references, hypotheses = [], []
  fetches = {
  'inferred_ids': inferred_ids,
  }
  fetches_ = sess.run(fetches, feed_dict=feed_dict)
  labels = np.array(features.tgt_labels).reshape(-1,1)
  hypotheses.extend(h.tolist() for h in fetches_['inferred_ids'])
  # references.extend(r.tolist() for r in labels)
  hypotheses = utils.list_strip_eos(hypotheses, eos_token_id)
  # references = utils.list_strip_eos(references, eos_token_id)
  hwords = tokenizer.convert_ids_to_tokens(hypotheses[0])
  # rwords = tokenizer.convert_ids_to_tokens(references[0])

  hwords = tx.utils.str_join(hwords).replace(" ##","")
  # rwords = tx.utils.str_join(rwords).replace(" ##","")
  # print("Original",rwords)
  print("Generated",hwords)
  return hwords

@app.route("/results",methods=["GET","POST"])
def results():
story = request.form['story']
summary = request.form['summary']
hwords = infer_single_example(story,summary,tokenizer)
return hwords

if name=="main":
sess.run(tf.global_variables_initializer())
sess.run(tf.local_variables_initializer())
sess.run(tf.tables_initializer())
saver.restore(sess, tf.train.latest_checkpoint(model_dir))
# app.run(host="0.0.0.0",port=1118,debug=False)
story = "Story text about 200 tokens"
summary = "Summary text about 150 tokens"
# story = input("Enter article:").strip("/n")
# summary = input("Enter summary:").strip("/n")
hwords = infer_single_example(story.strip("/n"), summary.strip("/n"), tokenizer)
print(hwords)
and this is the config,py
import texar as tx
dcoder_config = {
'dim': 768,
'num_blocks': 6,
'multihead_attention': {
'num_heads': 8,
'output_dim': 768
# See documentation for more optional hyperparameters
},
'position_embedder_hparams': {
'dim': 768
},
'initializer': {
'type': 'variance_scaling_initializer',
'kwargs': {
'scale': 1.0,
'mode': 'fan_avg',
'distribution': 'uniform',
},
},
'poswise_feedforward': tx.modules.default_transformer_poswise_net_hparams(
output_dim=768)
}

loss_label_confidence = 0.9

random_seed = 1234
beam_width = 5
alpha = 0.6
hidden_dim = 768

opt = {
'optimizer': {
'type': 'AdamOptimizer',
'kwargs': {
'beta1': 0.9,
'beta2': 0.997,
'epsilon': 1e-9
}
}
}

#warmup steps must be 0.1% of number of iterations
lr = {
'learning_rate_schedule': 'constant.linear_warmup.rsqrt_decay.rsqrt_depth',
'lr_constant': 2 * (hidden_dim ** -0.5),
'static_lr': 1e-3,
'warmup_steps': 10000,
}

bos_token_id =101
eos_token_id = 102

model_dir= "./models"
run_mode= "train_and_evaluate"
batch_size = 1
eval_batch_size = 1
test_batch_size =1

max_train_steps = 100000

display_steps = 1
checkpoint_steps = 500
eval_steps = 50000

max_decoding_length = 400

max_seq_length_src = 512
max_seq_length_tgt = 400

epochs =10

is_distributed = False

data_dir = r"data/"

train_out_file = r"data/train.tf_record"
eval_out_file = r"data/eval.tf_record"

bert_pretrain_dir=r"./bert_uncased_model"

train_story = r"data/train_story.txt"
train_summ = r"data/train_summ.txt"

eval_story = r"data/eval_story.txt"
eval_summ = r"data/eval_summ.txt"

bert_pretrain_dir = r"../uncased_L-12_H-768_A-12"

`

[Simons2017]

Hello, I met the same problem. How did you solve it?@Tanmay06

[Tanmay06]

Hi, actually I was away and was working on a different project. @Simons2017 I think you should try @santhoshkolloju 's reply just before your comment. I think it should work.

[yuyanzhoufang]

@santhoshkolloju, hi, How do I change this?
src_input_ids:np.array(features.src_input_ids).reshape(1,-1),
src_segment_ids : np.array(features.src_segment_ids).reshape(1,-1),

[Tanmay06]

@yuyanzhoufang change this line in the original code.

Abstractive-Summarization-With-Transfer-Learning/Inference.py

Lines 56 to 57 in 97ff2ae

	src_input_ids:np.array(features.src_input_ids).reshape(-1,1),
	src_segment_ids : np.array(features.src_segment_ids).reshape(-1,1)

[yuyanzhoufang]

hi, in class "CNNDailymail", "if set_type == "test" and i == 0:continue"，Why filter out "test == 0" ？