schrenklab Goto Github PK

2015-tutorials

tutorials for 2015 EDAMAME

2018-tutorials

Tutorials and schedule for EDAMAME 2018

brew

🍺 The missing package manager for macOS

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

jones_r_files

krona

Interactively explore metagenomes and more from a web browser.

lab_scripts

Standalone scripts used in the lab's various bioinformatics workflows

miseq_wetlab_sop

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

paper_putman_communityassembly

Data files generated and used for analyses and R code used for data processing and analyses

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

reproducible_research

Website for the Riffomonas Reproducible Research Tutorial Series

volcanoes

Miller PhD