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BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Genetic Simulation, originally based of XKCD's what-if dnd character model of inheritance.
ChiBio primary operating system.
A GUI-based surface CRN simulator, written in Rust
CS155 Project 3, by the Coli Crew (John Marken & Samuel Clamons)
An audio debugger for DNA
Parsing tools for GTF (gene transfer format) files
A framework for quickly developing simulations of evolutionary experiments.
Hypothesis is a powerful, flexible, and easy to use library for property-based testing. Forked for dev work
Juliabox continues to run, but this codebase is no longer current.
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.
An analysis of the D&D.Sci problem from LessWrong (https://www.lesswrong.com/posts/HsxT2cpPWYzTg9tpY/d-and-d-sci)
Functions for building Echo picklists and directions for setting up source plates for the Echo. Mostly intended for setting up TX-TL experiments.
MATLAB code for variable selection from microarray expression data by binomial regression with Penalized Euclidean Distance.
adapter trimmer for Oxford Nanopore reads
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Package for simulating and displaying chemical reaction networks (CRNs) on a surface.
Common statistical tests are linear models (or: how to teach stats)
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
XBASE - a database and web framework for bacterial genomics and next-generation sequencing
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.