scverse Goto Github PK

.github

anndata

Annotated data.

anndata-tutorials

Use cases for anndata.

anndatar

AnnData interoperability in R

benchmark

Code for running benchmarks

cookiecutter-scverse

Cookiecutter template for scverse

cookiecutter-scverse-instance

Example repository generated from https://github.com/scverse/cookiecutter-scverse. This repo is updated automatically to match the latest version of the template.

ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

genomic-features

Genomic Features in Python from BioConductor's AnnotationHub

governance

Governance docs for scverse

mudata

Multimodal Data (.h5mu) implementation for Python

multi-condition-comparisions

Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)

muon

muon is a multimodal omics Python framework

muon-site

Muon website

muon-tutorials

Tutorials for multimodal omics data analysis

muon.jl

Muon for Julia

napari-spatialdata

Interactive visualization of spatial omics data

plotting_api

Experimenting with a simplified plotting API for scanpy/scirpy

prelude-runner

Jupyter notebook runner that executes preludes before each cell

rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

rapids_singlecell-notebooks

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scanpy-tutorials

Scanpy Tutorials.

scanpy_usage

Scanpy use cases.

scirpy

A scanpy extension to analyse single-cell TCR and BCR data.

scverse-io

Read various formats into AnnData and MuData

scverse-tutorials

Tutorials for learning scverse

scverse.github.io

scverse.org website

scvi-colab

Lightweight helper to install scvi-tools in Google Colab

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data