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alfred-workflows

Alfred Workflows for Developers

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

barleylandraces

These are the scripts used for analysis and figures in the manuscript:"Barley landraces are characterized by geographically heterogeneous genomic origins"

bcalm

de Bruijn graph compaction in low memory

best-app

收集&推荐优秀的 Apps/硬件/技巧/周边等

bio_scripts

Practical scripts for bioinformatics

bio_tools

Useful bioinformatic scripts

biocode

Bioinformatics code libraries and scripts

bioinformatics-training

Bioinformatics training resources

biokit

a versatile toolkit for processing and analyzing diverse types of sequence data

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

bless

blobology

Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC step (NO LONGER MANTAINED)

cgat

CGAT - Computational Genomics Analysis Tools

cgatpipelines

Collection of CGAT NGS Pipelines

clustering_with_ani

clustering any sequences using ANI (Average Nucleotid Identity)

cnvcaller

de_novo-identification

divtime

Bayesian molecular clock dating tutorial with genome-scale datasets

emmax_workflow

ensembl-pipeline

Job management for the Ensembl Genebuild pipeline

examl-tree-ancestor

pipeline stitching together fasttree, examl, and lazarus/paml for phylogenetics and ancestral sequence reconstruction

fastp

A FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)

formatconverters

free-programming-books

gagetracker

tool for dating gene age by micro- and macro-synteny with high speed and accuracy

gene_loss

genelosspipe

genome_analysis

genomics-and-bioinformatics

Exercise sheets