sebastian-gregoricchio Goto Github PK
Name: Sebastian Gregoricchio
Type: User
Company: Netherlands Cancer Institute
Bio: https://orcid.org/0000-0001-9209-5403
Twitter: s_gregoricchio
Location: Amsterdam, NL
Name: Sebastian Gregoricchio
Type: User
Company: Netherlands Cancer Institute
Bio: https://orcid.org/0000-0001-9209-5403
Twitter: s_gregoricchio
Location: Amsterdam, NL
ChIP-seq pipeline specific for the Zwart lab
ChIP-seq Intersample Normalization
Snakemake pipeline for analysis and normalization (without SPIKE-IN) of CUT&Tag data starting from fastq.gz files.
Easy to use snakmake function to run the parallel download of SRA runs via fastq-dump.
An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
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