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amon

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

andi

♥ Efficient Estimation of Evolutionary Distances

annotated_twitter_covid19_dataset

A Biomedically Oriented automatically annotated Twitter COVID-19 Dataset

aperta-accessum

aphrodite

[in development]

assemblyevaluator

A simple tool for evaluating a metagenomic assembly

auto-gpt-chat-gpt-prompts

An experimental open-source attempt to make GPT-4 fully autonomous.

awesome-shiny-extensions

🐝 Awesome R packages that offer extended UI or server components for the R web framework Shiny

biobakery

Singularity build file for biobakery container

checkm

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

coexpnets

Co-expression network management based on WGCNA + k-means

conceptforge

conda_envs

coregenomeprimers

Design clade-specific primers targeting a pan-genome core gene

course_2021_radboud

Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/

covid19_twitter

Covid-19 Twitter dataset for non-commercial research use and pre-processing scripts - under active development

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

datma

Distributed AuTomatic Metagenomic Assembly and Annotation framework

dirfactor

ditaxa

Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection

docker-galaxy-blast

:whale: Galaxy Docker repository with NCBI Blast tools (Galaxy Blast flavour)

fastp

fmap

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

foam-fork

Foam workpace template

fur

Find Unique genomic Regions

gattaca-public

Lightweight metagenomic binning

genie

A quick way into a systemd "bottle" for WSL

genome-grist

map Illumina metagenomes to genomes!

gmpr

Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data

grateful

Facilitate citation of R packages