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annotate-platypus-vcf

Automatic annotation of variants called by platypus

arduino-welding-positioner

Arduino controlled rotary weld positioner

argon-flow-controller

Arduino code and hardware description for a flow-controlled TIG torch trigger

bfs

Bird flu sampling database and its web interface

cppnumericalsolvers

L-BFGS-B implementation in C++11 using Eigen

data-canvas

Improved event handling and testing for the HTML5 canvas

dechrom

fastq-tools

Small utilities for working with fastq sequence files.

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

fuji-exr

Various decoder tools for Fuji EXR image data

gdbinit

Gdbinit for OS X, iOS and others - x86, x86_64 and ARM

gt-2-thermistor-experiment

How good is this thermistor?

libmaus2

collection of data structures and algorithms

locus

A PostgreSQL data type representing genomic locus

mojito-demos

Screencasts, trainings and demos about Mojito

nclscan

We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcripts (fusion, trans-splicing, and circular RNA) from paired-end RNA-seq data.

ngb

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

pgrest

enable REST in postgres

pileup.js

Interactive in-browser track viewer

pindel2bam

Convert Pindel data into SAM & BAM formats.

rotary-welding-positioner

An Arduino-controlled DIY welding positioner

selkovjr.github.io

Demo code

stat-ct

A trainee assessment tool for Cardiothoracic services derived from STAT

ts

Torrent Suite

unfinnigan

Automatically exported from code.google.com/p/unfinnigan

vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

vt

A tool set for short variant discovery in genetic sequence data.

web-gui-snippets

Useful gadgets and code snippets lifted from my work on ACMACS GUI (2011-2014).