serratus-bio Goto Github PK
Name: Serratus
Type: Organization
Bio: An open-science collaboration to uncover Earth's viruses
Location: Vancouver, BC
Blog: https://serratus.io/
Name: Serratus
Type: Organization
Bio: An open-science collaboration to uncover Earth's viruses
Location: Vancouver, BC
Blog: https://serratus.io/
making some sense out of biosample_set.xml.gz
Python script to extract Biosample metadata to a csv file
Archival fork
Accelerated BLAST compatible local sequence aligner.
Archival fork
monorepo for data explorer UI and APIs
Database of virus RdRP barcode sequences
AWS Lambda service for `palmid` R-package/container
Tools (written in C using htslib) for manipulating next-generation sequencing data
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Archival Fork of the main Serratus repository.
[deprecated] See serratus-summary-api repo for latest implementation.
Archive-Only. See: https://gitlab.pasteur.fr/rchikhi_pasteur/serratus-batch-assembly
code for Serratus database curation and API routes
serving Serratus summary data via a public API
POC for serving Serratus summary data via AWS Athena
serving Serratus summary data via a public API
parse and upload Serratus summary files to various AWS offerings via AWS Lambda
Small scripts that perform useful functions related to the serratus platform.
Front-end code for Serratus project website
making Serratus SRA run metadata query-able
R Data Exploration for Serratus
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