sfu-ireceptor Goto Github PK

adc-api-plots

airr-seqaa

AIRR-seq Adaptive Adapter

api

iReceptor API definition (YAML)

canarie-monitor

Monitoring web app for CANARIE: returns IPA (iReceptor Public Archive) status. By aggregating statuses of the several IPA machines.

celltypist

A tool for semi-automatic cell type annotation

config

Configuration files (used by other iReceptor components)

conga

Clonotype Neighbor Graph Analysis

dataloading-curation

Data curation files for IPA (iReceptor Public Archive) - includes sample metadata template file

dataloading-mongo

Scripts to load data into a MongoDB service repository

dataprocessing-curation

Data processing and curation files, primarily around the processing required up to, and including, VDJ annotation.

gateway

iReceptor gateway

immunarch

🧬 Immunarch by ImmunoMind: R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

ir_base_app

A basic Analysis App for the iReceptor Gateway

ir_clone_stats

Repo for iReceptor Clone analysis App

ir_histogram

iReceptor Gateway Histogram Analysis App

ir_junction_aa_motif_search

Docker container for iReceptor Junction AA Motif Search

ir_statistics

iReceptor Gateway Statistics Analysis App

ireceptor-monitor

Web app monitoring the iReceptor infrastructure

performance-monitor

Scripts to monitor the performance of the AIRR Data Commons

rep-cred

SW Tools Group - Repertoire Credibility Tool

repository-admin-mongodb

Web interface for MongoDB service repository

repository-mongodb

Dockerized repository (MongoDB) for Docker turnkeys

sandbox

For experimenting with odds and ends

service-awstats

AWstats web statistics for service

service-js-mongodb

[deprecated] iReceptor service (Javascript/MongoDB)

service-php-mongodb

iReceptor service (PHP/MongoDB)

service-php-mysql

[deprecated] iReceptor service (PHP/MySQL)

stats-api-ireceptor

This repository contains Python code with iReceptor's Stats API vs Facet count test

tcrmatch

Fork of TCRMatch for iReceptor Gateway App integration

turnkey-gateway

Docker turnkey for the iReceptor Gateway