Comments (1)
Also should rename as it's not just INFO fields being tested here.
It would be nice to move away from having one big VCF here with all the stuff in it and to use the sgkit code as a generator for pytest, so that we can more systematically look at these things. The full run-validate cycle is quite slow currently.
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Related Issues (20)
- Returning a string from `.mkschema` HOT 1
- Document status of Python API
- Fixup msprime based tests when packages are fixed
- Add "what about cloud?" docs
- Add explicit warning for Mac Python 3.9
- New tool: tskit2zarr HOT 1
- Document copying to cloud storage HOT 1
- Refactor docs build infrastructure
- Restructure vcf2zarr docs
- Add --no-progress (or similar) to suppress progress
- Bug in dexplode-partition
- Change dexplode-init to use ``--num-parts``/``-n`` instead of positional HOT 1
- Change dencode-init to use --num-partitions
- Hypothesis testing for vcf2zarr HOT 5
- Pin to zarr < 3
- ValueError: could not broadcast input array
- Run tests against Zarr 3 HOT 1
- Run tests against numpy 2 HOT 3
- Set copy=True in np.array creation for numpy 2.0 compatibility HOT 1
- ICF stores created with numpy 1.x won't work with numpy 2.x HOT 1
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