Comments (3)
Hi @jacobk14 - first thanks for trying SimBA! However, for the moment, we only support Windows use. This is a known issue with the encoded windows path preventing SimBA to boot on Linux / MacOS. Even if you do get past this specific issue, there are many path readings in SimBA that are designed for Windows making it difficult to work with in Linux at the moment.
Please see these closed issues for some related info:
For now, I recommend getting hold of a Windows machine and run SimBA on it. You mention you are running Linux on a virtual machine. If this happens to be on native Windows, I'd suggest exiting the virtual machine and installing/running SimBA in native Windows.
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Hi @jacobk14 - I've uploaded a Linux compatible version here - it's very much work in development but most of the function (excluding some of the video pre-processing functions) should work in Linux. If you do decide to try it out and encounter some bugs it would be great if you report them so I can fix them asap
pip install simba-uw-tf-dev
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Hi! First, thanks so much @sgoldenlab for the work in progress Linux version! I'm trying to use it now and running into a few kinks regarding install on an Ubuntu virtual machine (through MATE) when I try to run simba
. The first two were straightforward enough: didn't find module named numba
so I ran pip install numba
; then couldn't find the file TheGoldenLab.png
, so I manually found the file and changed the name from TheGoldenLab.PNG
to lowercase.
Now I'm getting another error after the GoldenLab image pops up:
_tkinter.TclError: couldn't recognize data in image file "/sfs/qumulo/qhome/akh8zm/.conda/envs/simba-linux/lib/python3.6/site-packages/simba/golden.png"
I've verified that the file does exist and the properties look ok to me:
Not sure about next steps. Some issues I've found online say that tkinter can only support GIFs but that would require changing the filename.
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Related Issues (20)
- Segementation fault when creating a new project HOT 9
- labelling behavior HOT 22
- Problem analyzing ROI data Aggregates HOT 26
- SHAP visualization failed HOT 7
- SHAP Multiprocessing Failed HOT 4
- Certain filename patterns prevent importing SLEAP H5 files HOT 10
- Unable to add ROIs Ubuntu HOT 3
- Analyze ROI data not working for multiple videos HOT 13
- Undersample still results serious imbalance HOT 2
- SIMBA VALUE ERROR- Issue Importing H5 and slp tracking data HOT 10
- How to remove video from behavioral annotation dataset HOT 1
- Using Random forest behavioral classifiers from OSF repository HOT 26
- Trouble installing simba HOT 26
- Determination of classifier thresholds HOT 1
- Should preprocessed videos be those used in SLEAP? HOT 1
- Remapping keyboard shortcuts for behavior annotation. HOT 9
- New to simba - installation not working on Mac M2 Max HOT 37
- Plotly Interface is not available HOT 3
- Video Parameters Opening Black Frames HOT 14
- Simba not running after install HOT 21
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