shaniamare Goto Github PK
Name: Shani Amarasinghe
Type: User
Company: Monash Biomedicine Discovery Institute
Bio: Postdoc, Bioinformatics, RNA-Seq, ATAC-Seq. single-cell, long-reads
Twitter: ShaniAmare
Location: Melbourne, Victoria
Shani Amarasinghe's Projects
2018-bioinfosummer-scrnaseq
bookdown-demo
A minimal book example using bookdown
flair
Full-Length Alternative Isoform analysis of RNA
long_read_benchmark_project_scripts
A safe place for the personal scripts used in the long-read benchmarking project.
lrt_test
facelift temporary database for long-read-tools.org
nextflow-nf-core
The space to put the nf-core files I am implementing
scpipe
a pipeline for single cell data analysis
scpipe-manuscript-materials
The repo to store the code for the manuscript containing scPipe upgrades (Amarasinghe et al, 2023)
scrna-tools
Table of software for the analysis of single-cell RNA-seq data.
shaniamare.github.io
The repository for the personal website
spatialdecon
The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)
squigglekit
SquiggleKit: A toolkit for manipulating nanopore signal data
system-immunology-hackathon
ASI Systems Immunology x OzSingleCell Hackathon 2023 in Melbourne Australia
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