shankarkshakya Goto Github PK

amplicon_sorter

Sorts amplicons from Nanopore sequencing data based on similarity

aps_intror_2019

Introduction to R

bi-be-cs-183-2023

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

bravo

An R package that performs Bayesian iterated screening and/or variable selection for ultra-high dimensional Gaussian linear regression models

bulk-rnaseq

Bulk RNA-seq analysis.

cazys

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

data-science-for-beginners

10 Weeks, 20 Lessons, Data Science for All!

data-science-learning-resources

A collection of machine learning resources that I've found helpful (I only post what I've read!)

deepbsa

DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.

dlaicourse

Notebooks for learning deep learning

f0knockout

Data and scripts of preprint Kroll et al., 2020 – F0 knockout method

gala

Long-reads Gap-free Chromosome-scale Assembler

gbs-pcinnamomi

genome_size_estimation

geppopgen

gwaspoly

GWAS software that can handle autopolyploids

hawk

Hitting associations with k-mers

how-to-code

The resources I always recommend to new programmers.

je

a suite to handle barcoded fastq files with (or without) Unique Molecule Identifiers (UMIs) and filter read duplicates using these UMIs

labs

Rmd source files for the HarvardX series PH525x

mapping_example

Mapping Example for Polyploid computational support session

mappoly

Genetic maps in autopolyploids

ml-for-beginners

12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

mybmonday

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

mypackage

orthofinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

p.inf-2015-16-ssr

pangene

WIP: Constructing a pangenome gene graph