Name: Scott Hazelhurst
Type: User
Company: University of the Witwatersrand
Bio: I lecture in the School of Electrical & Information Engineering at Wits, and am a senior scientist at the Sydney Brenner Institute for Molecular Bioscience.
Twitter: shazeZA
Location: Johannesburg
Blog: dept.ee.wits.ac.za/~scott
Scott Hazelhurst's Projects
Baobab LIMS is an open-source laboratory information management system (LIMS)
Illumina Basespace Download
COVID 19 Data and Dashboard for South Africa
A repo for the BAMStats command, used as the tutorial for Dockstore
Scripts for the GAPW project
Scripts and reference files to type Group A Streptococcus
Population structure and PCA viewer
Supporting material for H3Africa Structural and Copy Number Variant paper: summary data and scripts
Scripts and results for the H3Africa paper on structural and copy number variants
Simple code to manage idat files
YANLT
Code to produce barcodes from a list of IDs. Uses the LaTeX psbarcode package to do this
Simple quick and dirty workflow for calling PacBio data
Docker files
Deepvariant + GLnexus
Taking jobs to storage
A flexible framework for rapid genome analysis and interpretation