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Hi there 👋

My name is Shazia Ruybal Pesántez and I am a genomic epidemiologist currently based in London 🇬🇧

My research focus and interests:

  • 🤝 applied ("field") epidemiology
  • 🧬 genomic epidemiology and population genetics
  • 🔍 pathogen surveillance
  • 👩‍🔬infectious diseases, mainly malaria and other vector-borne diseases 🦟 and more recently COVID-19 🦠
  • 📈 data analytics and digital tools
  • 👩‍🏫 capacity-building and teaching

👩‍💻 I code in R (and currently learning C++!)

Shazia Ruybal Pesántez's Projects

2022-05-04-it-takes-a-spark icon 2022-05-04-it-takes-a-spark

Materials for the Disease Detectives R-Ladies Melbourne workshop prepared for It Takes a Spark Conference for high school students and teachers in STEM

amms2022 icon amms2022

This repository holds all of the code for the Applied Malaria Molecular Surveillance (AMMS) 2022 workshop, held at the EPHI in Addis Ababa, 5-7 August 2022.

automate-cv-rmd icon automate-cv-rmd

Automate your CV - easy as 1, 2, knit! A workshop to get from data to professional CV using R Markdown presented at R-Ladies Melbourne

covidclassifyr icon covidclassifyr

The source code for the covidClassifyR Shiny web application, which streamlines the data processing of Luminex-based SARS-CoV-2 serological data to classify recent exposure to COVID-19

covidclassifyr-workshop icon covidclassifyr-workshop

A four-day workshop on how to use the covidClassifyR Shiny web application, designed for Papua New Guinea Institute of Medical Research researchers

covidclassifyr_user2022 icon covidclassifyr_user2022

Slides for a useR! 2022 conference talk on covidClassifyR: a Shiny app to streamline data analysis pipelines to enhance the monitoring of COVID-19 in Papua New Guinea

cv icon cv

CV built with R Markdown and the vitae package

dashboard-mundialfifa icon dashboard-mundialfifa

"Crea tu dashboard en R: Visualizando Datos del Mundial FIFA 1930-2018" Un taller para aprender a crear dashboards con R impartido en el Brown Bag Seminar del Laboratorio de Innovacion en Salud, UPCH

drpower_app icon drpower_app

This tool is designed to help researchers conducting Plasmodium pfhrp2/3 gene deletion studies, it uses the DRpower package (mrc-ide.github.io/DRpower) in the backend for simulations

ghana-var-age-immunity icon ghana-var-age-immunity

Analysis code and source data for the publication "Age-specific patterns of DBLα var diversity can explain why residents of high malaria transmission areas remain susceptible to Plasmodium falciparum blood stage infection throughout life" published in International Journal for Parasitology

r03-alphascreen-analysis icon r03-alphascreen-analysis

Analysis code and source data for the manuscript " Identification of novel Plasmodium vivax proteins associated with protection against clinical malaria"

shiny_dide icon shiny_dide

:star2::hospital::star2: DIDE shiny server configuration

varcode-ecuador icon varcode-ecuador

This repository stores the data and code for the manuscript entitled "Molecular epidemiology of continued Plasmodium falciparum disease transmission after an outbreak in Ecuador" by Ruybal-Pesántez et al

website icon website

Archive of personal website with Hugo Academic theme

website-apero icon website-apero

Archive of personal website using blogdown + Hugo Apero theme

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