shlokanegi Goto Github PK
Name: Shloka Negi
Type: User
Company: University of California, Santa Cruz
Bio: PhD Biomolecular Engineering & Bioinformatics, UCSC
Twitter: NegiShloka
Location: California, USA
Shloka Negi's Projects
brm-gene-expression-luad
callmods_5hmc
Generates high-confidence 5hmC mod calls using modkit, other stats and plots
card_nanopore_wf
WDL workflows for variant calling and assembly using ONT
circrna-analysis-pipeline
denovo_snps
Workflow built over vcfeval with custom-filtering to generate annotated denovo candidates in a trio.
dnamodswremora
Evaluating Remora for Identification of DNA mods
errorsimulator_usher_sarscov2
A simulation platform that tries incorporating realistic errors into simulated SARS-CoV-2 genomes.
giraffedeepvariant_exome
Performance Evaluation of Giraffe-DeepVariant Workflow on WES data
intro_python
Lecture Notes and Slides for UCSC CSE20, formatted as Jupyter Notebooks.
merge_vcfs_wf
Merge individual sample VCFs to create a unified multi-sample VCF, optionally allowing for modification of sample names.
modbam_calcmeth_wf
Calculates haplotype-specific average percent modification per region, and additional stats, using modbamtools
pb-motif
PB-Motif: A method for identifying gene/pseudogene rearrangements with PacBio long reads
polymer-pred-optimization
variant_annotation_wf
Workflow to annotate SNVs, indels, and structural variants
wdl-workflows
WDL workflows
wdl_workflows
WDL workflows
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