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ansible-locales

Ansible role to set up locales in Debian-like systems

ansible-role-calibre

Install and run a Calibre content server.

ansible-role-gitlab

Ansible Role - GitLab

ansible-role-nextcloud

Ansible role to install and configure nextcloud

ansible-roles

Collection of OME Ansible roles

ansible-roles-1

Manala ansible roles

ansible_calibre

calibre-web ansible role.

ansible_nextcloud

Ansible role for installing a nextcloud server.

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

b-soid

Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.

basic-illumination

ImageJ BaSiC shading correction for use with Ashlar

biop-bash-scripts

Bash scripts to simplify your life (let's hope so!)

biop-omero-scripts

Series of script to make use of OMERO

biop-qupath-scripts

This repository contains Scripts we found useful when using QuPath

cycif

Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

docker-example-omero

OMERO Docker compose example

ejbca-ce

EJBCA® – Open-source public key infrastructure (PKI) and certificate authority (CA) software.

embedai

An app to interact privately with your documents using the power of GPT, 100% privately, no data leaks

glencoe-omero-scripts

Plugins for OMERO

heip

i-librarian-free

I, Librarian - open-source version of a PDF managing SaaS.

imagej-virtualstain

jax-omero-utils

A module and scripts for working with OMERO

jcms-root

The Jackson Laboratory Colony Management System

myosothes

An automated Myofibers Segmentation wOrkflow Tuned for HE Staining

nextcloud

Ansible playbook to install nextcloud, php, nginx or apache, mariadb or postgres, redis-server, onlyoffice or collabora office

nocodeseg

🔬 Code-free deep segmentation for computational pathology

obiwan-microbi

Omero based integrated Workflow for annotating Microbes in the Cloud

ome-tiff-pyramid-tools

Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

omero-onenode

Example of deploying an OMERO.server on a single-node