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1kg_sv_comparison

a-pro

ASTRAL for PaRalogs and Orthologs

abc-enhancer-gene-prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

abcloud

Launch and manage cloud computing resources for antibody repertoire analysis

abstar

VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

abtools

Analysis of antibody NGS data

abutils

addo

A comprehensive toolkit to detect, classify and visualise additive and non-additive Quantitative Trait Loci

afann

Alignment-Free methods Adjusted by Neural Network

aideveloper

GUI-based software for training, evaluating and applying deep neural nets for image classification

alphafold

Open source code for AlphaFold.

amlvaran

A web-based platform for detecting and assessment of genetic variants from targeted Next-Generation sequencing experiments.

amplimap

amplicon/smMIP mapping and analysis pipeline

animint

animated and interactive web graphics

anndata

Annotated data.

annotationpipeline-evm_based-dclab

Cantù Lab @ UC Davis - Annotation pipeline - EVM based

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

archr_2020

Publication Page for ArchR Manuscript 2020

ascat

ASCAT copy number R package

atac-seq-pipeline

ENCODE ATAC-seq pipeline

athlon

Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-machine-learning-cn

机器学习资源大全中文版，包括机器学习领域的框架、库以及软件

awesome-python-cn

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由「开源前哨」和「Python开发者」微信公号团队维护更新。

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamdst

a lightweight bam file depth statistical tool

bamreport

Report on a BAM file

bamsnap

bamsurgeon

*10X Genomics haplotype-aware SNV mode* \\ tools for adding mutations to existing .bam files, used for testing mutation callers

bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊