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Sichong's Projects

angus icon angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

atac-seq icon atac-seq

Snakemake workflow for ATAC-seq analysis

cdna_cupcake icon cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

deeptools icon deeptools

Tools to process and analyze deep sequencing data.

eva_instrumentality icon eva_instrumentality

The lark's on the wing; The snail's on the thorn; God's in his heaven— All's right with the world!

functional-annotation icon functional-annotation

Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.

gffutils icon gffutils

GFF and GTF file manipulation and interconversion

nasa_apod_wp icon nasa_apod_wp

Set Astronomy Picture Of the Day (APOD) as wallpaper on ubuntu

sambamba icon sambamba

Tools for working with SAM/BAM/CRAM data

scaffolds icon scaffolds

WIP On-demand environments for learners who were unable to install software

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

sqanti3 icon sqanti3

Repository of SQANTI3 tool for Quality Control of Long-Read Defined Transcriptomes

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