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braincode

braincode_selector

braincodepy

braincoder

brainconn

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

carpetplotr

Fast and easy visualization of fMRI data quality using carpet plots.

cbig

connectomeqc

A accessible automated pipeline for resting-state fMRI quality control.

cv

My CV

dicer

Diffuse Cluster Estimation and Regression. A de-noising tool.

ggseg

Plotting tool for brain atlases, in ggplot

ggseg3d

ggseg3d R package for cisualising brain atlases through plotly

micapipe

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Readthedoc documentation below

nappy_dcm

Data quality control report for the Dynamic Causal Modelling study using the for the Neural Adaptations in the PostPartum Year (Nappy) study.

networkdeformationmodels

Code and data for STAGES network deformation models paper.

neuro-vis-brainhack-2021

plotly

An interactive graphing library for R

predictingcognition

psychosisconnectome

reponeurovis

Reproducible and Programmatic Human Neuroimaging Visualisations

sidchop.github.io

sir_simulator

agent-based S-I-R model for neurodegeneration

stages_rs-fmri

Code for paper: Functional Connectivity in Antipsychotic-Treated and Antipsychotic-Naive Patients With First-Episode Psychosis and Low Risk of Self-harm or Aggression

surface_preprocessing

Surface Preprocessing Pipeline for human fMRI (cocoanlab)

tractoflow

TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity

visualiseregressors

Some r code to visualise what nuisance regressors (global signal, FD, DiCER etc) look like spatially.

yfinance

Yahoo! Finance market data downloader (+faster Pandas Datareader)