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abc-nam

abc_maize

albatross

R package

analysis2

Analysis for the second consortium paper.

as.color

R package to assign random colors to unique items in a vector

calibrator

A simple method for species delimitation

canals

A holistic molecular sequence representation

cds_fold

Outputs the 0-fold and 4-fold sites from a gff and reference genome.

cv

My Curriculum vitae

degenotate

dfe-alpha_cli

A wrapper for running the DFE-alpha software

diploshic

dmc

Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples

dna-seq-gatk-variant-calling

evortorials

Evolutionary Biology (EBIO 3080) lecture slides and tools to help students with R.

genomics-align3r

Example script for aligning Illumina reads to a reference with bwa and calling snps and indels with samtools

genomics2015

Like Christmas elves, but for bioinformatics

git-tooty

slides and material for joint lab meeting presentation

gpfreqs

housekeeping

various bioinformatics scripts for converting file types and other mundane tasks to complete on the terminal

lasthenia_curves

lasthenia_docker

Containerized repo for reproducing results in Grow where you thrive, or where only you can survive? An analysis of performance curve evolution in a clade with diverse habitat affinities."

ml_popgen_container

Container for Machine Learning and Population Genetics

ms_sub

msmc2_to_usfs

msr

Process MS results in R, in a tidy way

ou-sim-app

A shiny app for demonstrating 2 regime OU process

panand_structure

Simple nextflow pipeline for running NGSadmix starting with a VCF

panandbib

Annotated bibliography for RILAB panand project

parv_local