simoncmo's Projects
Instruction and script to generate files needed files for 3D reconstruction tool by Tao and Aiden
plotting functions for cell trek
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
This is repo with some enhanced Seurat default functions I found it useful for plotting
Processing script for spatial data in HTAN
adding st part
Place to put the script I used to process scRNA-seq CCRCC sample data before running inferCNV
St NMK scripts
pik3ca proteomics phospho processing and analysis script
Shared functions used in many scripts
Config files for my GitHub profile.
DingLab spaceranger pipeline
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
Explore neighborhood using Visium ST