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airship

A Low-Cost, Open-Source, Robotic Airship for Education and Research

cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

cellprofiler

An open-source application for biological image analysis

cognitive_biais_bingo

Create Bingo grid for cognititive biaises.

cornerstone

JavaScript library to display interactive medical images including but not limited to DICOM

coronavirus_search

covid_19

COVID19 case numbers Cantons of Switzerland and Principality of Liechtenstein (FL) - case numbers include persons tested in the respective area. The data is updated at best once a day (times of collection and update may vary). Start with the README.

covid_sequence

Analysis of the genetic sequence of the Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) compared with other viruses from the same familly (Coronaviridae) in diferent hosts.

cycif_validation

Code and data for validation studies of cycIF multiplex imaging platform

dataset-histology-landmarks

Dataset: landmarks for registration of histology images

deep-learning-and-backtracking-sudoku

Solve a sudoku from camera using deep-learning and backtracking

deeplearning-biology

A list of deep learning implementations in biology

deeplearningsinglecellbiology

Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis

divers_plots

economics_trends_plots

simple notebook for web scraping of economics and trending data

elastic_deformation

Elastic deformation of images

encode_downloader

Downloader for ENCODE

idh2_r172a

Code for preprocessing and analysis of data for our manuscript

inaugural_speech_reading_scores

Grading inaugural speaches of US presidents using the Flesch–Kincaid readability tests

ising_model

Simple ising Model

journalclub

Reading great papers in the history of artificial intelligence and machine learning

methylr2py

Python wrapped R packages for methylation array analysis

onco_gps_paper_analysis

Shareable project for: Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States :scroll:

outbreak_simulation

paml

PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data.

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

python_molecular_evolution

Using python to learn aspects of molecular evolution

pythondcmview

Basic python3 based dicom viewer using PyQT5 and pydicom

pythonidae

Curated decibans of scientific programming resources in Python.

querynator