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ananse

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.readthedocs.io

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

bioinfosummer

Tutorial for AMSI BioInfoSummer 2018

biothings_client.py

This is a generic Python client for BioThings APIs

bokeh

Interactive Data Visualization in the browser, from Python

bucketcache-feedstock

A conda-smithy repository for bucketcache.

byte_of_python

A Byte of Python book

cargo-port

cache packages permanently

devcomvis

Visualization practical for DevCom

dragonn

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

facilitators-penalosa-ruiz

fluff

Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.

geo2fastq

Download FASTQ files from the SRA archive

geoparse

Python library to access Gene Expression Omnibus Database (GEO)

gimmemotifs-manuscript

intercode

joris_scripts

kerasr

R interface to the keras library

maelstrom-poster

Maelstrom poster for RSG-DREAM 2016

markdown-pp

Preprocessor for Markdown files to generate a table of contents and other documentation needs

moods

MOODS: Motif Occurrence Detection Suite

norns

Simple yaml-based config module

numpy

The fundamental package for scientific computing with Python.

p53scan

p53scan & p63scan: search for the p53 or p63 motif

pharmgkb

BioThings Studio tutorial

pita

Pipeline to improve transcript annotation based on RNA-seq and ChIP-seq data.

psap

CLI interface for the PSAP classifier, Mierlo, G. van. Predicting protein condensate formation using machine learning (Manuscript in Preparation).

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pydnase

Python module for the easy handling and analysis of DNase-seq data