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Shane Neph's Projects

bedops icon bedops

:microscope: BEDOPS: high-performance genomic feature operations

byte-store icon byte-store

Generate and explore upper triangular and square matrices of 1-byte values

genotyping icon genotyping

Call genotypes directly from epigenomics datasets

metamask-extension icon metamask-extension

:globe_with_meridians: :electric_plug: The MetaMask browser extension enables browsing Ethereum blockchain enabled websites

modwt icon modwt

An efficient modwt wavelets package. This isn't the usual discrete wavelet transform found in, for example, the gsl but an extended set of algorithms designed to overcome some problems with the usual discrete wavelet transform.

mss icon mss

All Maximal Scoring Subsequences algorithm

satfactor icon satfactor

Convert an integer factorization problem into a boolean SATISFIABILITY problem.

soda icon soda

Python-based UCSC genome browser snapshot-taker and gallery-maker

stream-plots icon stream-plots

Streaming plotting programs: scatterplot, histogram, sparkline, and timeline

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