skiyaga Goto Github PK

16s-rrna-analysis

ace

Seminar materials for BCBB ACE Workshops

ace-2020

African Centers of Excellence (ACE) Training for 2020

ace-class-notes

A place to put some of the lecture notes I use to teach

ace-intro-to-ml-algorithms

Intro to ML Algorithms Course Materials for ACE Uganda

ace-short-course-idi-10th-13th-dec-2019

Short course at IDI Dec 10th-13th 2019

alignoth

Creating alignment plots from bam files

allele_data_filtering.r

filter alleles from mad4hatter's main output allele_data.txt

amr-bio-africa-2022

ariba

Antimicrobial Resistance Identification By Assembly

autoresearcher

⚡ Automating scientific workflows with AI ⚡

bactopia

A flexible pipeline for complete analysis of bacterial genomes

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

big-data-ace-programming

Scripts written by the Big Data ACE Programming team

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

bioinformatics-and-machine-learning-analyses

biological_databases_api

An introduction to Biological Databases and how the API can be used to access data

biopython

Official git repository for Biopython (converted from CVS)

biopython_workshop

A basic introduction to Biopython, intended for a classroom based workshop

bp-drug-mr

Multi-ancestry MR of blood pressure drug targets

brava_validation

Data, code, and figures related to the manuscript "Analytic optimization of Plasmodium falciparum marker gene haplotype recovery from amplicon deep sequencing of complex mixtures"

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

categorical-data-analysis

clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

class-exercise-kipkurui

class-exercise-kipkurui created by GitHub Classroom

code-best-practices

coiaf

Complexity of Infection Estimation with Allele Frequencies

coiaf-manuscript-work

Code and figures for the coiaf publication

coiaf-real-data

MalariaGEN Plasmodium falciparum Community Project analysis using coiaf

copy_cluster_copy.sh

checks the integrity of direcrories transfered through scp from cluster to local (and viceversa)