sklasfeld Goto Github PK
Name: Samantha Klasfeld
Type: User
Company: Pfizer
Bio: Postdoctoral Fellow Rare Disease Research Unit, Pfizer
Twitter: sjk314
Location: United States
Name: Samantha Klasfeld
Type: User
Company: Pfizer
Bio: Postdoctoral Fellow Rare Disease Research Unit, Pfizer
Twitter: sjk314
Location: United States
This is the repository for ADAGE (Analysis using Denoising Autoencoders for Gene Expression)
Course Website for UC Davis BIS180L
Application for making ENCODE Blacklists
code to annotate a ChIP peak file in BED format (6 columns)
CIS 545: Big Data Analytics (Spring 2018)
CoGe (Comparative Genomics) Platform
Rigor, Reproducibility, Transparency, and Reagent Validity for Computational Biologists
The Python programming language
Updated DANPOS2 to work with python3
Tools to process and analyze deep sequencing data.
modENCODE Galaxy on Amazon Cloud
Resource for GCB study materials
IDR
This code follows ENCODEs pipeline for running IDR (Li et al 2011)
Repository for Penn PDSG to Build our Own Kaggle Competition
Create ChIP-Seq blacklists automaticaly and validate them.
Repo for all the Penn Data Science Group to store their scripts and inputs for the Google Store data science competition
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
Course materials for 4 week python programming bootcamp at Penn
As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on the HPC resources, where Torque and Slurm managers are both supported
Scipy Cookbook
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Scripts and data for re-creating TDM results.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.