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aks_snakemake

ascchipanalysis

Workflow for processing ChIP-Seq data for ASC Hi-C paper

baseimage-docker

A minimal Ubuntu base image modified for Docker-friendliness

bioconda-recipes

Conda recipes for the bioconda channel.

breast_cancer_nucleome

bug_reports

Data for bug reports

camda2019-tcga

camda2019-workflows

snakemake workflows for processing TCGA RNA-Seq data for the CAMDA2019 challenge

cellcycle

Analysis of cell-cycle stage dependent chromatin remodeller interactions

cellcycle_workflow

cellular_identity_nucleome

covid-19-signal

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

ddr_chromatin

Explore the relationship between chromatin organization in cancer model systems and alterations to DNA Damage Response (DDR) pathways

deeptoolsutils

a collection of R functions used for the supporting analysis of HTS-data with deepTools

disqus-api-recipes

Cook all the things!

distiller-sm

a Snakemake version of distiller (deprecated!)

docker-bcl2fastq

Docker container for Illumina demultiplexing program

docker-firefox

Firefox on docker over X11

embryotimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

ercc_performance

scripts for comparative analysis of RNA-Seq data using ERCC spike-in

funktio-ai-samples

Samples and demos for Getting Data

generalpurpose

genesets

genomicsscripts

Scripts for genome analyses

ggparallel

R package for creating hammock plots and parallel sets plots using the ggplot2 framework.

h2ab3transcriptome

Scripts and tools for deployment of transcriptome re-assembly pipeline

h2az_emt_azurebatch

h5n1_sna

Repository containing R code for the social network analysis of epidemiological survey data of live bird markets in Bali and Indonesia.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_pipeline

A user-friendly Hi-C data processing software based on hiclib