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bashem

coot

Software for macromolecular model-building

coot-trimmings

Python customizations for the macromolecular model building software Coot.

cryoem-scripts

Badly written scripts for making cryoEM easier

cryoid

cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.

cwf_denoise

Covariance Estimation and Denoising for Cryo-EM Images (Covariance Wiener Filtering)

dynamicbind

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

eman2

A scientific image processing software suite with a focus on CryoEM and CryoET

girlscodingdaydemo

gtom

hello-world

just another repository

learning

liblion

lipidens

miscem

Various tcsh and bash scripts for file handling and maniupulation of EM micrographs and data derived thereof

mrcfile

A Python implementation of the MRC2014 file format

pixer

PIXER: An Automated Particle-selection Method Based on Segmentation Using a Deep Neural Network

pyem

Python programs for electron microscopy

python-101-tutorial

relion

Image-processing software for cryo-electron microscopy

relion-1

Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

relion_realtime_preview

Follow your classification and refinement in Relion the real time!

sars-cov-2-proteins

scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

serialem

Simple macros for SerialEM

serialem-scripts

startool

The Swiss Army Knife for Editing Relion .STAR Files

statements

Successful Job Applications and Grants

the-baker-lab

topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples