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allhic

ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

bac-genomics-scripts

Collection of scripts for bacterial genomics

be-a-professional-programmer

成为专业程序员路上用到的各种优秀资料、神器及框架

biocode

Bioinformatics code libraries and scripts

biocode-1

biocode

bioinformatics

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bioperl-live

Core BioPerl 1.x code

build-web-application-with-golang

A golang ebook intro how to build a web with golang

canu

A single molecule sequence assembler for genomes large and small.

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

cfvisual

A Visualized Software for Comparetive Analysis of Gene Family

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

circlize

Circular visualization in R

circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in single command line driven software.

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

con_genome_data

This repository contains the genome sequences and annotation information of the CON genome (Camellia oleifera Abel. var. 'Nanyongnesis').

copytranslator

Foreign language reading and translation assistant based on copy and translate.

dcc

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

diamond

Accelerated BLAST compatible local sequence aligner.

dna-seq-analysis

my notes on whole exome and whole genome sequencing analysis

drago-api

Disease Resistance Analysis and Gene Orthology (DRAGO)

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

ergatis

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.

evidenceontology

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO (we'd be grateful) and other useful information. Follow @ecoontology on Twitter.

genome_assembly_lecture

A lecture for basic genome assembly

genometools

GenomeTools genome analysis system.

gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

ggbiplot

A biplot based on ggplot2

ggplot2

An implementation of the Grammar of Graphics in R