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Thomieh73 avatar Thomieh73 commented on May 27, 2024

Hi,
I actually overcame the installation issue on our cluster

I Installed MicrobeCensus using pip on my area on the computing cluster using the command:

pip install --user MicrobeCensus

after that I add the line to my .bash_profile file to point to the file run_microbe_census.py

export PATH=$PATH:/usit/abel/u1/thhaverk/.local/bin

Now I can run the program easily.

So in the instructions add the --user flag for pip. That makes it easier if you are not a superuser.
Thomas

ps. this tool runs well on my macbook.

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snayfach avatar snayfach commented on May 27, 2024

I've added that to the README on GitHub. Let me know if you have any other comments, questions, or suggestions. Thanks for using MicrobeCensus!

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