Comments (2)
Hi,
I actually overcame the installation issue on our cluster
I Installed MicrobeCensus using pip on my area on the computing cluster using the command:
pip install --user MicrobeCensus
after that I add the line to my .bash_profile file to point to the file run_microbe_census.py
export PATH=$PATH:/usit/abel/u1/thhaverk/.local/bin
Now I can run the program easily.
So in the instructions add the --user flag for pip. That makes it easier if you are not a superuser.
Thomas
ps. this tool runs well on my macbook.
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I've added that to the README on GitHub. Let me know if you have any other comments, questions, or suggestions. Thanks for using MicrobeCensus!
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Related Issues (20)
- MC should use the Unix exit code convention HOT 1
- temp files when program exits of error HOT 1
- Doc request: TMPDIR HOT 1
- training.py: Unused test set? HOT 3
- Pip install error from official 1.1.0 tarball HOT 4
- Installation on a cluster redux HOT 6
- could not convert string to float: FIRM56_P641593085 HOT 4
- Test failed HOT 3
- Python2 dependency in conda HOT 1
- problem reading multiple files HOT 9
- Gene Sequences in Fasta HOT 2
- How the performance would be for metatranscriptomes? HOT 2
- making sense of results... HOT 3
- question: calculation of RPKG HOT 1
- MicrobeCensus is not using all the reads when set to a large number HOT 3
- TypeError: 'NoneType' object is not iterable HOT 5
- "Could not import module 'numpy'" HOT 3
- Something wrong when put 'python setup.py install' HOT 1
- differences with other normalization methods HOT 2
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