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bbs

bedtools

A powerful toolset for genome arithmetic.

bioc_docker_old

Docker containers for Bioconductor

bioc_notebooks

Provide Binder'ised jupyter notebooks from Bioconductor Vognettes

bioc_notebooks_prebuilt

Just a Dockerfile to launch sneumann/bioc_notebooks w/o time-consuming build on binder

bioclipse.clustering

clustering algorithms for bioclipse

bioconductor.org

Website for bioconductor.org

biocversion

bioinvindex

The web application, model, database persistence, services package and web services for the BII. Led by Tim Booth (NERC), Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford), Mirek Dylag (IT Mentor Software Ltd.) and Marco Brandizi (EMBL-EBI))

bioschemas-validator

This is the validation suite targeting metadata conforming to Bioschemas profiles.

bioschemas.github.io

Files for the Bioschemas website.

blueobelisk.github.io

The website.

boostheaders

Playground for the BH package originally at rforge

bozen-tputorial

Toying around with TPU on GKE

bridgedb-r

R package for BridgeDb

bridgedbr

BIoconductor R package for BridgeDb

caasp-services

Layered Services on the SUSE Container-as-a-Service Platform

camera

This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data

cdkr

Integrating R and the CDK

certbot

Certbot is EFF's tool to obtain certs from Let's Encrypt and (optionally) auto-enable HTTPS on your server. It can also act as a client for any other CA that uses the ACME protocol.

chemotion-viz

classyfirer

R Interface to the ClassyFire REST API

configuration-files

ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

container

Options for running ProteoWizard applications via containers (e.g. Docker)

container-apps

container-galaxy-k8s-runtime

First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator

container-metabolab

Metabolab

container-metchemdata

Docker container to create your own MetChem compound database.

container-metfrag

initial work in progress

convertmzmlwrapper

This repo contains some local convenience scripts around mzML converision tools