Comments (11)
In GitLab by @nonnominandus on Mar 4, 2020, 12:54
The coverage (matches/total positions) of all regions (CDR's Framework and constant for Heavy and light chain) will be calculated.
The parameterset as discussed will be:
- Input - the set (4x proteases, 4x percentages)
- K - 6, 7, 8, 12, 16
- Alphabet - common errors, default
- Recombine - default settings - n: 2, cutoff: 0.5, alphabet: blosum62, gapstart: 12, gapextend: 1
This results in 1760 runs, which should be doable in ~1.5 hours.
By Douwe Schulte on 2020-03-04T11:54:02 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 5, 2020, 16:19
marked the task Create plots as completed
By Douwe Schulte on 2020-03-05T15:19:06 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 9, 2020, 15:59
closed
By Douwe Schulte on 2020-03-09T14:59:47 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 5, 2020, 16:19
changed the description
By Douwe Schulte on 2020-03-05T15:19:01 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 4, 2020, 12:54
marked the task Compare consensus sequence with real sequence as completed
By Douwe Schulte on 2020-03-04T11:54:10 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 4, 2020, 12:54
marked the task Test the effect of all variables as completed
By Douwe Schulte on 2020-03-04T11:54:12 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 2, 2020, 13:48
mentioned in commit d4eb7696c3687bd3889b84815cf6e0f350ae474c
By Douwe Schulte on 2020-03-02T12:48:20 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 3, 2020, 10:00
mentioned in commit 71e7c6b03fb56ee10f5ed90eda340ad6384aefa3
By Douwe Schulte on 2020-03-03T09:00:06 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 3, 2020, 16:01
mentioned in commit 929466c52b8327f6cf7d63a7bf244b2ceff15637
By Douwe Schulte on 2020-03-03T15:01:39 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 2, 2020, 13:47
changed the description
By Douwe Schulte on 2020-03-02T12:47:55 (imported from GitLab)
from stitch.
In GitLab by @nonnominandus on Mar 2, 2020, 13:48
marked the task Create clean FASTA as completed
By Douwe Schulte on 2020-03-02T12:48:21 (imported from GitLab)
from stitch.
Related Issues (20)
- Rebuilding CDR3 is still very hard HOT 2
- How to create templates for a new species HOT 1
- Add fastQ export option HOT 1
- Force germline on low DOC
- Merge reads based on precursor mass
- Highlight common errors in consensus alignment
- Use proteases specificity
- Support MaxQuant database search input data HOT 5
- How could I use stitch to analyze my antibody sequence produced by PEAKS ? HOT 13
- Folder search HOT 4
- error in basic search HOT 3
- Unrecognized Casanovo result.mztab file line start code HOT 16
- Index out of range HOT 3
- Casanovo local confidence invalid HOT 3
- How can I use Stitch to assemble my peptide sequences? HOT 1
- How to use raw data HOT 1
- confused result HOT 2
- Error in Casanovo file parsing HOT 40
- Casanova help
- Suggested setting for fasta file as input with certain modifications HOT 8
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from stitch.