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Name: Nicholas Socci
Type: User
Name: Nicholas Socci
Type: User
Wrapper/accessory scripts for CMO-Tempo
Script to create HALO AFI Files
Add OncoKb annotations to MAF
A portable and reproducible pipeline for targeted analysis
Pipeline to process ATAC-seq data (BAMS)
Copy number pipeline for bacterial WGS
Simple variant pipeline for computing variants on bacterial genomes
Bioinformatics core RNAseq pipeline
BIC@MSKCC Variants Pipeline
Repo for bliss pipeline
ChIP-seq pipeline
ChIP-seq pipeline for Keeney Lab (Version 2; LUNA)
Merge two CMO projects from their portal repository folders
Labs and Lectures for 2016 Computational Genomics Workshop in Berlin
Central location for CWL CommandLineTools
Prototype code to delivery roslin-variants output
Apply common variants (from ExAC) filter to MAFs
helper R scripts that do many useful functions utilizing the facets CRAN package and its output
Wrapper around counting and facets R code
2023 version of facets workflow
Generate MAF FillOut files
FillOut 2021 - Tools & Scripts for doing fillouts
Fix the multiallelic indels from haplotypecaller to deal with bug with overlapping in/dels
Tools to detect which genome was used and data files with paths / info for genomes used
Visualize and annotate genomic coverage with ggplot2
Report01
Code, scripts and pipelines for HaJaVa paper (McFadden, et. al. 2016)
Lung specific project files for Halo study
Halo project B-101-533
Halo Xi - Lightweight module to process Halo data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.