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Nicholas Socci's Projects

adagio icon adagio

Wrapper/accessory scripts for CMO-Tempo

argos-cwl icon argos-cwl

A portable and reproducible pipeline for targeted analysis

atac-seq icon atac-seq

Pipeline to process ATAC-seq data (BAMS)

cmomerge icon cmomerge

Merge two CMO projects from their portal repository folders

exacfilter icon exacfilter

Apply common variants (from ExAC) filter to MAFs

facets-suite icon facets-suite

helper R scripts that do many useful functions utilizing the facets CRAN package and its output

fillout21 icon fillout21

FillOut 2021 - Tools & Scripts for doing fillouts

fixmultiindel icon fixmultiindel

Fix the multiallelic indels from haplotypecaller to deal with bug with overlapping in/dels

genomedata icon genomedata

Tools to detect which genome was used and data files with paths / info for genomes used

ggcoverage icon ggcoverage

Visualize and annotate genomic coverage with ggplot2

hajava icon hajava

Code, scripts and pipelines for HaJaVa paper (McFadden, et. al. 2016)

haloxi icon haloxi

Halo Xi - Lightweight module to process Halo data

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