Name: Soichi Hayashi
Type: User
Company: brainlife.io @ Indiana University
Bio: A software engineer @ brainlife.io. Making supercomputers more accessible for researchers and scientists.
Twitter: soichih
Location: Bloomington, Indiana
Blog: http://soichi.us
annextest
test repo for git annex
app-3dpialwm_freesurfer
This application converts Freesurfer's pial and white matter surfaces to different file types. It will convert the lh/rh.pial, lh/rh.white, lh/rh.smoothwm, lh/rh.inflated files into your choice of file type (stl, vtk, gii, mgz)
app-afq_figures
App to plot the fibers outputted from AFQ
app-afqclean
An application to provide cleaning of AFQ output
app-anat-stats
Sample app to generate some random stats from anatomy
app-benson14-retinotopy
Brainlife.io app for Noah Benson's neuropythy library, retinotopy from T1 anatomy
app-bids-hcppipeline
Run HCP Pipeline powered by BIDS app
app-bids-tracula
BIDS app for FS Tracula for BrainLife. Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool.
app-binvolvolume
computes the volume of binary nifti images
app-brainstorm-1_import_anatomy
app-clever
Clever
app-conn-preprocessing
fMRI preprocessing via CONN
app-convert-tractmeasures-2-tractprofile
app-converttck2trk
This service will convert mrtrix tck files to tractvis trk files
app-crop_reorient_t1
This application will crop and reorient the T1 image to standard orientation and FOV using FSL's fslreorient2std and robustfov.
app-detect-ecg-artifact
A sample brainlife app that uses EEG data (fif)
app-fmri-2-mat
fmriprep outputs to connectivity matrices
app-generatetractmasks
app to generate binary masks of the segmented fiber tracts
app-generatetractsurfaces
app to generate surfaces of each fiber tract
app-hcp-postfreesurfer
BIDS app for HCP post-FreeSurfer for BrainLife. Outputs include surface topologies and features resampled onto the high (164k) dimensional atlas space as well as myelin mappings. (Please see https://github.com/Washington-University/HCPpipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage#structural-preprocessing for more information on HCP structural pipelines.)
app-hcp-prefreesurfer
BIDS app for HCP pre-FreeSurfer for BrainLife
app-lbspectrum
app to calculate the Laplace Beltrami spectrum using mindboggle
app-lbspectrum_matlab
Application to calculate the Laplace Beltrami Spectrum and Eigenvectors using Matlab.
app-mergetck
Merge multiple TCK files into one TCK file.
app-mouse_seg
Pipeline for mouse brain skull-stripping and ROI segmentation
app-mp2rage-denoiseuni
Removes noise in an MP2RAGE_UNI.nii.gz image given a user-provided regularization parameter (see app-mp2rage-selectregparam).
app-multiatlastt
brainlife.io version of maTT
app-networkmatrices
more flexible network app
app-networkneuro
Build structural brain networks using diffusion-weighted MRI, tractography and a brain atlas for cortical and subcortical parcellation.
app-noddi_amico
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
