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accadam_tf2

TF2-compatible Accumulated Gradients for Adam

af2bind

af_backprop

af_bfloat16

af_tests

afdesign_partial

WIP

algosb_2021

for algosb workshop

alphafold

Open source code for AlphaFold.

am216

Material for lecture

casp15_analysis

colabbio

random colab notebooks for biology

colabdesign

Making Protein Design accessible to all via Google Colab!

colabdesign_params

params moved to seperate repo

colabfold

Making Protein folding accessible to all!

deeplearningexamples

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

e2e

embointegmodelling23

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

gremlin

GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.

gremlin_cnn

gremlin_cpp

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

gremlin_lh

helixfold

laxy

lazy wrapper around jax

map_align

Contact map alignment

omegafold

OmegaFold Release Code

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

responsiblereview

rfdiffusion

Code for running RFdiffusion