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Soo Lee's Projects

benchmark icon benchmark

Benchmark function for pipelines developed and used by 4DN-DCIC in CWL/WDL (dependency of Tibanna)

cooler icon cooler

A cool place to store your Hi-C

cwltool icon cwltool

Common Workflow Language reference implementation

frenchverbmarker icon frenchverbmarker

A web page that allows the user to mark French verbs according to their tense / mood.

gatk-docker icon gatk-docker

Docker source file for duplexa/gatk_env:v1 on hub.docker.com

hic2cool icon hic2cool

Lightweight converter between hic and cool contact matrices.

juicer icon juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

pairix icon pairix

A temporary fork from 4dn-dcic/pairix for the PR purpose

pieberg icon pieberg

Pipeline Execution Benchmark Report Generator

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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