Comments (3)
and num or scaled, too.
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This is being fixed in #380 by traversing the tree, which could be slow for some storages (e.g. IPFS). It does seem like something that could be stored directly in the index, @luizirber.
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this was fixed both in some selector PRs and also now in #1590, which provides (still-optional) manifests that contain this information (and more!)
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Related Issues (20)
- LINS tutorials HOT 1
- /.singularity.d/runscript: 3: exec: trim-low-abund.py: not found HOT 4
- `tax grep` doesn't search the identifiers!
- Transcriptome of interest, gather in metaTs signatures, repeat. Faster or directly to mapping? HOT 4
- Panic Error when using sourmash gather HOT 3
- `sig cat` selection relies on md5sum, which can pull in unwanted sigs with duplicated md5 HOT 1
- automated test builds are failing routinely (but sporadically) b/c of coverage HOT 1
- Comparing the taxonomic composition of multiple metagenomes HOT 2
- Finding best reference from NGS data HOT 4
- `sig check` very slow for large databases? HOT 1
- print empty results from `sourmash tax`?
- tutorial TODO: finding the best reference sequences for NGS data HOT 1
- add `--report-zero-counts` to tax metagenome kreport format
- verify that `combine_kreports.py` works with our kreport format
- If loaded `0` signatures from a file, still writes an output HOT 2
- Differing dendrogram outputs from plot - `--labeltext` is honored differently by dendrogram and matrix outputs HOT 6
- Filter out plant contamination from sketch file HOT 2
- testing infrastructure, strategies and guidelines for plugin code HOT 2
- examine/re-examine `minhash.hashes` and its caching
- build_wasm actions are failing with a pydantic error HOT 2
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