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followers: 14.0 following: 15.0 repos: 24.0 gists: 1.0

Name: Stephane Plaisance

Type: User

Company: VIB

Bio: Wet-lab biologist turned into bioinformatics trainer and dataminer.

Location: Belgium

Blog: https://www.vib.be

Hi there 👋

✨ few facts about me

✨ I was trained as a molecular biologist during 15y wet lab and turned into data analyst and trainer
🔭 I’m currently working on biological data obtained in our sequencing facility
🌱 I’m currently learning every day a little bit more about biology and biocomputing
👯 I’m looking to collaborate on training and data analysis techniques to make science advance
🤔 I’m looking for help with using more tools and methods to achieve my goals
💬 Ask me about my experiences with biocomputing and molecular data
📫 How to reach me: [email protected]
😄 Pronouns: vee-eye-bee
⚡ Fun fact: Stephane is a boy's name and so am I

Stephane Plaisance's Projects

analyses

data mining & explorations

another_git

bionanothinkmate-nc

devnet

The DevNet project on github stores the PacBio DevNet website.

flo

Same species annotation lift over pipeline.

fork-repository

This repository is made for teaching purposes.

genomicconsensus

PacBio® variant and consensus caller

github-slideshow

A robot powered training repository :robot:

hello-github-actions

kentutils

UCSC command line bioinformatic utilities

lotus2

Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.

markdown-cheatsheet

Markdown Cheatsheet for Github Readme.md

markdown-here

Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

mockcommunity

Long-read mock community experiments

my-project

oneliners

Useful bash one-liners for bioinformatics.

phased_primers_shiny

Shiny app to create phased PCR 1 primers for amplicon library preparation.

protocols

Repository for Public Protocols

q2-feature-classifier

QIIME 2 plugin supporting taxonomic classification

qiime-tools

scripts and methods to use Qiime2 on long-reads

read2tree

a tool for inferring species tree from sequencing reads

splaisan

Home Swiss-home

tiddit

TIDDIT - structural variant calling

wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

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